PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037022001
Common NameLOC100263465, VIT_03s0088g00610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24661.5 Da    PI: 8.8292
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037022001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.9e-211863449
                       -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k   qvtfskR+ g++KKA+EL++LC+a++a+++fs+ gk++ +
  GSVIVT01037022001 18 PKKNHLQVTFSKRKSGLFKKASELCTLCGANIAILVFSPGGKVFSF 63
                       5667789************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.745767IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-31766IPR002100Transcription factor, MADS-box
CDDcd001204.84E-30866No hitNo description
SuperFamilySSF554551.83E-24880IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-18929IPR002100Transcription factor, MADS-box
PfamPF003194.4E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVEKSSKGRQ KIEIAKIPKK NHLQVTFSKR KSGLFKKASE LCTLCGANIA ILVFSPGGKV  60
FSFGHPDVRY IVYSFFANIP PTKRSDLNLI EAHDQNASIH KLNLQLAEVL NQLEAEKKRG  120
EILGQIRASQ GQCWWEAPID ELSLFELQQL KVSMEELKKI VVSQAELLLM EGNANPSTFN  180
KVNGYPMVDD FEFERKLSEI HGLSIVPHVH NFGHGLGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J5e-15892186Myocyte-specific enhancer factor 2A
3p57_I5e-15892186Myocyte-specific enhancer factor 2A
3p57_D5e-15892186Myocyte-specific enhancer factor 2A
3p57_C5e-15892186Myocyte-specific enhancer factor 2A
3p57_B5e-15892186Myocyte-specific enhancer factor 2A
3p57_A5e-15892186Myocyte-specific enhancer factor 2A
3kov_J5e-15892186Myocyte-specific enhancer factor 2A
3kov_I5e-15892186Myocyte-specific enhancer factor 2A
3kov_B5e-15892186Myocyte-specific enhancer factor 2A
3kov_A5e-15892186Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4401720.0AM440172.2 Vitis vinifera contig VV78X025022.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270816.11e-161PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-51AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7T3M91e-161D7T3M9_VITVI; Putative uncharacterized protein
STRINGVIT_03s0088g00610.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-52AGAMOUS-like 62